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Table 3 Background subtraction. Difference in pairwise correlations before and after background subtraction

From: SmaRT2P: a software for generating and processing smart line recording trajectories for population two-photon calcium imaging

 

Anesthetized

Awake

 

Surr = 0

Surr = 1

Surr ≥ 2

Surr = 0

Surr ≥ 1

N SLS

146

53

57

16

12

∆ SNR

− 1.62 ± 0.21

(2.3e−13)

− 2.35 ± 0.39

(1.9e−6)

− 2.47 ± 0.37

(2.6e−7)

− 5.25 ± 4.26

(0.0023)

− 3.16 ± 1.56

(4.9e−4)

∆ pairwise correlations

− 0.35 ± 0.01

(1.0e−25)

− 0.42 ± 0.01

(2.4e−10)

− 0.43 ± 0.01

(5.1e−11)

− 0.20 ± 0.04

(0.0019)

− 0.30 ± 0.04

(0.0005)

  1. Only acquisitions with a reference raster segmentation are considered. Mean ± SEM (and p values for Wilcoxon signed rank test)