Table 1 Relation types from (a) the BioNLP shared task 2011 and (b) identified during the relation annotation process by our medical expert
From: An adaptive annotation approach for biomedical entity and relation recognition
Descriptions | |
|---|---|
(a) Relation types from BioNLP 2011 | |
Equivalent | Two protein or cell components are equivalent |
Protein-component | The protein-component is a less specific object-component relation that holds between a gene or protein and its component, such as a protein domain or the promoter of a gene. |
Subunit-complex | Subunit-complex is a component-object relation that holds between a protein complex and its subunits, individual proteins |
(b) New relation types | |
Activator-reactor | Two proteins linked with the same reaction; the first one is responsible for starting the reaction and the second one responsible for its sustainability |
Antibody–antigen | An immune protein with the ability to specifically bound the antigen, a foreign substance, and to neutralise its toxicity |
Cell-marker | A set of surface proteins typical for a cell lineage or a stage of development |
Cell-variant | The main cell lineage and the subtypes which are the parts of this larger cell family |
DNA-transcript | DNA and its mRNA (messenger RNA) which translate the gene‘s message to a protein product |
Ligand–receptor | Two proteins or molecules which can bind to each other because oft he complementarity of the binding site |
Protein-variant | Two proteins with the similar structure and function |