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Fig. 1 | Brain Informatics

Fig. 1

From: A semi-automated workflow solution for multimodal neuroimaging: application to patients with traumatic brain injury

Fig. 1

The complete schematics for the proposed workflow solution. Summed PET data were used for rigid-body co-registration with the structural MR image, which was spatially normalized to a standard brain template in the MNI space using SyN (and SyN-CCFM in the presence of focal lesion). Once the spatial correspondence was established, a set of ROIs taken from the AAL atlas defined in the MNI space was mapped back to the PET space to extract the cerebellar gray matter (for 18F-FDDNP). Parametric images of 15O-water PET (CBF and nCBF, 0–10 min) and 18F-FDDNP PET [R I and R P (0–6 min)] data were constructed using the corresponding methods (see Sect. 2). The same set of ROIs was applied to the CBF and relative-perfusion (R I and R P ) images to derive the associated regional values using the combined transformation between template and PET space

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