From: Identifying HIV-induced subgraph patterns in brain networks with side information
Symbol | Definition and description |
---|---|
|.| | Cardinality of a set |
\(\Vert . \Vert\) | Norm of a vector |
\({\mathcal{D}}=\{G_1,\ldots ,G_n\}\) | Given graph dataset, \(G_i\) denotes the i-th graph in the dataset |
\({\mathbf{y}}=[y_1,\ldots ,y_n]^\top\) | Class label vector for graphs in \({\mathcal{D}}\), \(y_i\in \{-1,+1\}\) |
\({\mathcal{S}}=\{g_1,\ldots ,g_m\}\) | Set of all subgraph patterns in the graph dataset \({\mathcal{D}}\) |
\({\mathbf{f}}_i=[f_{i1},\ldots ,f_{in}]^\top\) | Binary vector for subgraph pattern \(g_i\), \(f_{ij}=1\) iff \(g_i\subseteq G_j\), otherwise \(f_{ij}=0\) |
\({\mathbf{x}}_j=[x_{1j},\ldots ,x_{mj}]^\top\) | Binary vector for \(G_j\) using subgraph patterns in \({\mathcal{S}}\), \(x_{ij}=1\) iff \(g_i\subseteq G_j\), otherwise \(x_{ij}=0\) |
\(X=[x_{ij}]^{m\times n}\) | Matrix of all binary vectors in the dataset, \(X=[{\mathbf{x}}_1,\ldots ,{\mathbf{x}}_n]=[{\mathbf{f}}_1,\ldots ,{\mathbf{f}}_m]^\top \in \{0,1\}^{m\times n}\) |
\({\mathcal{T}}\) | Set of selected subgraph patterns, \({\mathcal{T}}\subseteq {\mathcal{S}}\) |
\({\mathcal{I}}_{\mathcal{T}}\in \{0,1\}^{m\times m}\) | Diagonal matrix indicating which subgraph patterns are selected from \({\mathcal{S}}\) into \({\mathcal{T}}\) |
min_sup | Minimum frequency threshold; frequent subgraphs are contained by at least min_sup \(\times |{\mathcal{D}}|\) graphs |
k | Number of subgraph patterns to be selected |
\(\lambda ^{(p)}\) | Weight of the p-th side view (default: 1) |
\(\kappa ^{(p)}\) | Kernel function on the p-th side view (default: RBF kernel) |